Ok, issue looks like you might have the old version of Tonberry.
Make sure you delete your /tonberry folder (backup your hashmaps folder, but get rid of hash2map and collisions along with everything else)
Then download 2.04 and put your hashmaps back in the folder. This version of tonberry will come with NEW hash2map and collisions files -- no need to move anything around.
This should fix your project eden problem as well as your carbuncle issue. i'm working on fixing the weird darkness that happens to the ground, but not sure 100 % how I'm going to go about doing that just yet.