Anyway...
When it comes to fictional works, interpretation is all that really counts. Any interpretation is acceptable as long as it can be justified with evidence and reasonable analysis, and as long as the author himself doesn't directly refute it.
Of course, with non-fictional works, it's different. Interpreting it in whatever way suits you is not appropriate, because it's the truth that counts this time (whereas truth doesn't exist in the fictional world, because none of it is even real).
I would therefore not encourage any argument that Jesus is from the Matrix, because the bible is argued by many to be a factual account (at least to some degree) of religious history. That, and also because the bible was written ages before the Matrix, so it would be grossly anachronistic.
By the way, Vincent is dead. Seriously, how could he not be? Hojo shoots him, he wakes up in a coffin five years later, and his second limit break turns him into Frankenstein's Monster.