All that you need to do is open up your bootleg folder, right click BFE and open as Admin then uncheck "Menu Overhaul, Style Switcher, Colourized items" under the Game Options Menu. Then it will not ask you for m004d.exe in the mod list. On another note even if you left m00d.exe in red on the mod list and started to install all the mods using Bootleg, once it got to to the point were it is suppose to install m004d.exe it would just say "file not found" and move on to the next mod making no difference at all.