If the mods are yellow, there's nothing to worry about. It's only if they're red that you need to worry about. Tifa's Torrent (most likely the one you downloaded) has all the mods needed for Bootleg .040 (latest version). As for the Barret model, I can't say for sure, but I haven't seen a new version.
As for updating mods, Bootleg may not work with updated ones, unless the structure is exactly the same. If you know how to do it, you should update them after Bootleg finished.